課程名稱 |
R在生態資料分析之應用 Ecological Data Analysis in R |
開課學期 |
105-2 |
授課對象 |
理學院 海洋生物及漁業組 |
授課教師 |
單偉彌 |
課號 |
Ocean5098 |
課程識別碼 |
241EU5050 |
班次 |
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學分 |
3.0 |
全/半年 |
半年 |
必/選修 |
選修 |
上課時間 |
星期二6,7,8(13:20~16:20) |
上課地點 |
115研討室 |
備註 |
本課程以英語授課。 總人數上限:10人 |
Ceiba 課程網頁 |
http://ceiba.ntu.edu.tw/1052Ocean5098_ |
課程簡介影片 |
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核心能力關聯 |
核心能力與課程規劃關聯圖 |
課程大綱
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課程概述 |
This course is designed to teach the usage of R for the analysis of ecological data. It will introduce students to several different analysis options for biological or ecological data (focusing specifically on community-level data) using the free & open-source statistical, mapping, and graphing platform R. Broad topics covered will include: introduction to R language and basic functions / graphics; basic mapping options; diversity measurement; univariate, multivariate, parametric and non-parametric analysis and their basis; functional diversity; and ecological time series analysis. Students will require a laptop for sessions. Schedule is subject to changes according to student progress. |
課程目標 |
待補 |
課程要求 |
Basic knowledge in ecology, biology and informatics
Laptop |
預期每週課後學習時數 |
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Office Hours |
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指定閱讀 |
待補 |
參考書目 |
Borcard D, Gillet F, Legendre P (2011) Numerical ecology with R. Springer-Verlag New York, 306 p. DOI 10.1007/978-1-4419-7976-6
Paradis E (2002) R for Beginners, Institute des Sciences de l'Evolution University Montpellier II (2002), 72p. Available at http://www.cs.uml.edu/~grinstei/vis2010/R-project%20Documents/Rdebuts_en.pdf
Zuur A, Ieno EN (2007) Analyzing ecological data. Springer-Verlag New York, 672 p. DOI 10.1007/978-0-387-45972-1
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評量方式 (僅供參考) |
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週次 |
日期 |
單元主題 |
第1週 |
2/21 |
Ecological data analysis in R: Intoduction
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第2週 |
2/28 |
No class - 2/28 holidays |
第3週 |
3/07 |
Data manipulation |
第4週 |
3/14 |
Graphics |
第5週 |
3/21 |
Loop, function, and basic models |
第6週 |
3/28 |
Mapping, GIS basics
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第7週 |
4/04 |
Spring Holidays - no class |
第8週 |
4/11 |
Descriptive statistics |
第9週 |
4/18 |
Statistical modeling |
第10週 |
4/25 |
Conference - No class |
第11週 |
5/02 |
GLMs |
第12週 |
5/09 |
Multivariate analyses in ecology (1)
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第13週 |
5/16 |
Multivariate analysis in ecology (2) |
第14週 |
5/23 |
Multivariate analysis in ecology (3) |
第15週 |
5/30 |
Dragon boat - no class |
第16週 |
6/06 |
Multivariate analysis in ecology (4) - unconstrained ordination / part 2 |
第17週 |
6/13 |
Multivariate analysis in ecology (5) - constrained ordination |
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